@article {163,
	title = {Assembly, Characterization, and Phylogenetic Relationships of Mitogenomes of Two Species of Mexican Trout (Oncorhynchus chrysogaster and O. mykiss nelsoni)},
	journal = {Fishes},
	volume = {8},
	year = {2023},
	month = {2023/04//},
	pages = {178},
	abstract = {In this study, the complete mitochondrial genomes of the Mexican golden trout, Oncorhynchus chrysogaster, and Nelson{\textquoteright}s trout, O. mykiss nelson, were assembled and characterized. The mitogenomes were 16,655 bp and 16,661 bp long, respectively, and were composed of 13 protein-coding genes (PCGs), two ribosomal RNA genes, and 22 transfer RNA genes (all with typical {\textquoteleft}cloverleaf{\textquoteright} secondary structures). The length of the D-loop regions was among the longest found in Salmonids, and mitochondrial synteny in both species was identical to that reported in other Salmonids. Selective pressure analysis in the PCGs indicated that purifying selection, mainly among cox and nd genes families, likely generated the main differences between the two studied species. Nine tRNA genes showed slight differences relative to other O. mykiss subspecies, which were identical between the two study taxa. The origin of the light-strand replication has a loop that was especially large in O. mykiss nelsoni. Phylogenetic analysis indicated that O. chrysogaster and O. mykiss nelsoni are sister species, contrary to the expectation that O. chrysogaster would cluster with O. gilae. As previous studies have suggested, O. chrysogaster and O. mykiss nelsoni share common ancestry with North American trout species.},
	keywords = {fish, Mexican golden trout, mitochondrial genome, Nelson{\textquoteright}s trout, Salmonidae, taxonomic status},
	isbn = {2410-3888},
	url = {https://www.mdpi.com/2410-3888/8/4/178},
	author = {Col{\'\i}n, Ang{\'e}lica and Del R{\'\i}o-Portilla, Miguel A. and Lafarga-De la Cruz, Fabiola and Ingle-De la Mora, Genoveva and Garc{\'\i}a-De Le{\'o}n, Francisco J.}
}
@article {16,
	title = {Mitochondrial haplotype variation in wild trout populations (Teleostei: Salmonidae) from northwestern Mexico},
	journal = {Reviews in Fish Biology and Fisheries},
	volume = {18},
	year = {2008},
	month = {2008///},
	pages = {33 - 45},
	abstract = {<p>The variation and composition of Mexican wild trout mitochondrial DNA haplotypes throughout northwestern Mexico was determined by means of polymerase chain reaction-restriction fragment polymorphism analysis (PCR-RFLP), of one region of mitochondrial DNA between cytochrome b and the D-loop. This analysis was based on 261 specimens taken in 12 basins and four hatcheries from northwestern Mexico. From 23 haplotypes, 15 wild trout haplotypes were identified and classified in four groups: (1) one restricted to Nelson\&$\#$39;s trout (Oncorhynchus mykiss nelsoni), (2) four restricted to R\&iexcl;o Mayo and R\&iexcl;oYaqui trout (O. mykiss sspp.), (3) six to Mexican golden trout (O. chrysogaster) with two subgroups, and (4) one exclusive to R\&iexcl;o Piaxtla trout. Distributions of native haplotypes broadly overlap the distribution of non-native hatchery rainbow trout reflecting the historical management of introductions of exotic rainbow trout and the artificial transference of these trout among basins.</p>
},
	keywords = {Chihuahua, Conchos, Cytochrome b, endangered, Mayo, Mexican trout, Oncorhynchus, Oncorhynchus mykiss, rainbow trout, Salmonidae, Truchas Mexicanas},
	url = {⬚d:\users\dean_h\reprints in pdf or other\Camarena_2008_Mt_haplotype_Mexican_trout.pdf⬚},
	author = {Camarena-Rosales, Faustino and Ruiz-Campos, Gorgonio and Rosa-V{\'e}lez, Jorge and Mayden, Richard L. and Hendrickson, Dean A. and Varela-Romero, Alejandro and Garc{\'\i}a de Le{\'o}n, Francisco J.}
}
